This function returns the names of the top n number of spatially variable features.
Usage
GetSpatiallyVariableMetabolites(object, assay = "SPM", n = 10)
Arguments
- object
SpaMTP Seurat class object containing the intensity values for each m/z
- assay
Character string indicating which Seurat object assay to pull data form (default = "SPM").
- n
Numeric value defining the top number of metabolites to return (default = 10).
Value
Vector containing m/z feature names corresponding to the top n number of spatially variable metabolites
Examples
utils::str(formals(GetSpatiallyVariableMetabolites))
#> Dotted pair list of 3
#> $ object: symbol
#> $ assay : chr "SPM"
#> $ n : num 10
# features <- GetSpatiallyVariableMetabolites(SpaMTP, n = 6)
