Converts a SpaMTP binned Cardinal Object into a SpaMTP Seurat Object

This function is used by LoadSM() when bin_package is set to 'SpaMTP'.

Usage

BinnedCardinalToSeurat(
  data,
  mtx,
  multi.run = FALSE,
  assay = "Spatial",
  verbose = TRUE
)

Arguments

data

A Cardinal Object that is being converted into a Seurat Object.

mtx

Matrix object containing

multi.run

Boolean indicating if there are multiple runs within the imported data. If TRUE, an index will be added to the pixel names per run, and an individual FOV will be generated per run in the Seurat Object (default = FALSE).

assay

Character string containing the name of the assay (default = "Spatial").

verbose

Boolean indicating whether to show the message. If TRUE the message will be show, else the message will be suppressed (default = TRUE).

Value

A Seurat Object containing the mz count data of the supplied Cardinal Object

Examples

# CardinalToSeurat(CardinalObj, run_name = "run_1")