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RAMP_Reactome: A list containing network plot information about pathways from the Reactome database

Source: R/Cleaned_Reference_Metabolite_Databases.R
RAMP_Reactome.Rd

This object contains a collection of information for each RAMP Reactome network, including their source, destination, direction, and reaction type for both proteins and metabolites.

Usage

RAMP_Reactome

Format

A list with 10 elements:

id

Reactome pathway identifier (character)

title

Pathway title (character)

database

Source database (character)

species

Species (character)

protEdges

A data frame with 1 row and 4 variables for protein edges, including src, dest, directed, and reaction_type (various types)

protPropEdges

A data frame with 747 rows and 4 variables for protein-protein interactions: src (character), dest (character), directed (integer), and reaction_type (integer)

metabolEdges

A data frame with 1 row and 4 variables for metabolite edges, including src, dest, directed, and reaction_type (various types)

metabolPropEdges

A data frame with 88 rows and 4 variables for metabolite interactions: src (character), dest (character), directed (integer), and reaction_type (integer)

mixedEdges

A data frame with 311 rows and 4 variables for mixed interactions between proteins and metabolites: src (character), dest (character), directed (integer), and reaction_type (integer)

timestamp

The date of data extraction (Date)