Generate binned intensity matrix based on reference peaks generated via Cardinal

Usage

bin_SpectralImagingExperiment(
  x,
  ref,
  spectra = "intensity",
  index = NULL,
  method = c("sum", "mean", "max", "min", "linear", "cubic", "gaussian", "lanczos"),
  resolution = NA,
  tolerance = NA,
  units = c("relative", "absolute"),
  verbose = getCardinalVerbose()
)

Arguments

x: The spectral data to be binned, typically a matrix or data frame.
ref: A vector of reference mass-to-charge (m/z) values for binning. If left unspecified, mass range will be used to generate reference peaks.
spectra: Character string specifying the column name for spectral intensity values (default = "intensity").
index: Character string specifying the column name for the m/z values (default = "mz").
method: A character vector specifying the binning method. Options include "sum", "mean", "max", "min", "linear", "cubic", "gaussian", and "lanczos". If not specified default method used is "sum".
resolution: Numeric value specifying the resolution for binning. If assigned as NA, the resolution will be automatically caculated based on the data (default = NA).
tolerance: Numeric value specifying the tolerance for m/z matching (default = NA).
units: Character string specifying the units for resolution. Options are "ppm" or "mz" (default = "ppm").
verbose: Boolean indicating whether to show the message. If TRUE the message will be show, else the message will be suppressed.

Value

Matrix object which has binned intensity values.

Examples

#Helper function for binning data in Matrix format